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Reliable Evaluation and Learning for Generative AI
Kun Zhao — LLM evaluation, post-training, and Medical AI
Posts
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portfolio
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publications
MRU-Net: A U-Shaped Network for Retinal Vessel Segmentation
Applied Sciences, 10(19):6823, 2020
Recommended citation: Hongwei Ding, Xiaohui Cui, Leiyang Chen, Kun Zhao, "MRU-Net: A U-Shaped Network for Retinal Vessel Segmentation." Applied Sciences, 10(19):6823, 2020.
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A Latent Variable Model with Hierarchical Structure and GPT-2 for Long Text Generation
International Conference on Artificial Neural Networks (ICANN 2021)
Recommended citation: Kun Zhao, Hongwei Ding, Kai Ye, Xiaohui Cui, Zhongwang Fu, "A Latent Variable Model with Hierarchical Structure and GPT-2 for Long Text Generation." (ICANN2021), 2021.
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A transformer-based hierarchical variational autoencoder combined hidden Markov model for long text generation
Entropy, 2021 (2025 JIF: 2.1)
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Recommended citation: Kun Zhao, Hongwei Ding, Kai Ye, Xiaohui Cui, "A transformer-based hierarchical variational autoencoder combined hidden Markov model for long text generation." Entropy, 2021.
A Heterogeneous Graph Enhanced LSTM Network for Hog Price Prediction Using Online Discussion
Agriculture, 11(4):359, 2021
Recommended citation: Kai Ye, Yangheran Piao, Kun Zhao, Xiaohui Cui, "A Heterogeneous Graph Enhanced LSTM Network for Hog Price Prediction Using Online Discussion." Agriculture, 11(4):359, 2021.
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Graph Enhanced BERT for Stance-Aware Rumor Verification on Social Media
International Conference on Artificial Neural Networks (ICANN 2021), pp. 422–435
Recommended citation: Kai Ye, Yangheran Piao, Kun Zhao, Xiaohui Cui, "Graph Enhanced BERT for Stance-Aware Rumor Verification on Social Media." ICANN 2021, pp. 422–435.
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Evaluating Open-Domain Dialogues in Latent Space with Next Sentence Prediction and Mutual Information
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)
CMN evaluates open-domain dialogue responses in latent space using next-sentence prediction and mutual information.
Recommended citation: Kun Zhao, Bohao Yang, Chenghua Lin, Wenge Rong, Aline Villavicencio, Xiaohui Cui, "Evaluating Open-Domain Dialogues in Latent Space with Next Sentence Prediction and Mutual Information." Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2023.
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Effective distillation of table-based reasoning ability from llms
Proceedings of the 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation (LREC-COLING 2024)
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Recommended citation: Bohao Yang, Chen Tang, Kun Zhao, Chenghao Xiao, Chenghua Lin, "Effective distillation of table-based reasoning ability from llms." Proceedings of the 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation (LREC-COLING 2024), 2024.
SLIDE: A Framework Integrating Small and Large Language Models for Open-Domain Dialogues Evaluation
Findings of the Association for Computational Linguistics ACL 2024
SLIDE combines a specialized small language model with an LLM evaluator for open-domain dialogue evaluation.
Recommended citation: Kun Zhao, Bohao Yang, Chen Tang, Chenghua Lin, Liang Zhan, "SLIDE: A Framework Integrating Small and Large Language Models for Open-Domain Dialogues Evaluation." Findings of the Association for Computational Linguistics ACL 2024, 2024.
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Interpretable Spatio-Temporal Embedding for Brain Structural-Effective Network with Ordinary Differential Equation
MICCAI 2024
STE-ODE models the interplay between structural and effective brain networks using directed graph embeddings and ordinary differential equations. Access the paper.
Recommended citation: Haoteng Tang, Guodong Liu, Siyuan Dai, Kai Ye, Kun Zhao, Wenlu Wang, Carl Yang, Lifang He, Alex Leow, Paul Thompson, "Interpretable Spatio-Temporal Embedding for Brain Structural-Effective Network with Ordinary Differential Equation." MICCAI 2024.
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Constrained Multiview Representation for Self-Supervised Contrastive Learning
Preprint
Recommended citation: Siyuan Dai, Kai Ye, Kun Zhao, Ge Cui, Haoteng Tang, Liang Zhan, "Constrained Multiview Representation for Self-Supervised Contrastive Learning." arXiv:2402.03456, 2024.
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BioMNER: A Dataset for Biomedical Method Entity Recognition
Preprint
Recommended citation: Chen Tang, Bohao Yang, Kun Zhao, Bo Lv, Chenghao Xiao, Frank Guerin, Chenghua Lin, "BioMNER: A Dataset for Biomedical Method Entity Recognition." arXiv:2406.20038, 2024.
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Brain Structural Network Alterations in Alzheimer's Disease: Perspectives from Ethnicity-Specific Factors
Alzheimer's & Dementia, 2025 (2025 JIF: 12.8)
Recommended citation: Haoteng Tang, Kun Zhao, Guodong Liu, Paul M. Thompson, Heng Huang, Alex Leow, Liang Zhan, "Brain Structural Network Alterations in Alzheimer's Disease: Perspectives from Ethnicity-Specific Factors." Alzheimer's & Dementia, 21:e101821, 2025.
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Who Matters More in Radiology Report Generation: Vision Encoders or Language Models?
SAIMBio Workshop at IEEE ICDM Workshops 2025
This study uses controlled component swaps to isolate the individual and interaction effects of vision encoders and language backbones. Access the paper.
Recommended citation: Kun Zhao, Yang Du, Rhianna Zhang, Liang Zhan, Dongkuan Xu, Pengfei Gu, Haoteng Tang, "Who Matters More in Radiology Report Generation: Vision Encoders or Language Models?" IEEE ICDM Workshops, 2025.
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GRAPHMOE: Amplifying Cognitive Depth of Mixture-of-Experts Network via Introducing Self-Rethinking Mechanism
Preprint
Recommended citation: Chen Tang, Bo Lv, Zifan Zheng, Bohao Yang, Kun Zhao, Ning Liao, Xiaoxing Wang, Feiyu Xiong, Zhiyu Li, Nayu Liu, Jingchi Jiang, "GRAPHMOE: Amplifying Cognitive Depth of Mixture-of-Experts Network via Introducing Self-Rethinking Mechanism." arXiv:2501.07890, 2025.
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A General Paradigm for Fine-Tuning Large Language Models in Alzheimer’s Disease Diagnosis
Proceedings of the AAAI Symposium Series, 5(1):37–42, 2025
Recommended citation: Marcus Zhan, Kun Zhao, Guodong Liu, Haoteng Tang, "A General Paradigm for Fine-Tuning Large Language Models in Alzheimer's Disease Diagnosis." Proceedings of the AAAI Symposium Series, 5(1):37–42, 2025.
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Overview of the BioLaySumm 2025 Shared Task on Lay Summarization of Biomedical Research Articles and Radiology Reports
Proceedings of the 24th Workshop on Biomedical Language Processing
Recommended citation: Chenghao Xiao, Kun Zhao, Xiao Wang, Siwei Wu, Sixing Yan, Tomas Goldsack, Sophia Ananiadou, Noura Al Moubayed, Liang Zhan, William K. Cheung, Chenghua Lin, "Overview of the BioLaySumm 2025 Shared Task on Lay Summarization of Biomedical Research Articles and Radiology Reports." Proceedings of the 24th Workshop on Biomedical Language Processing, pp. 365–377, 2025.
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Emphasising Structured Information: Integrating Abstract Meaning Representation into LLMs for Enhanced Open-Domain Dialogue Evaluation
Findings of the Association for Computational Linguistics: EMNLP 2025
Recommended citation: Bohao Yang, Kun Zhao, Dong Liu, Chen Tang, Liang Zhan, Chenghua Lin, "Emphasising Structured Information: Integrating Abstract Meaning Representation into LLMs for Enhanced Open-Domain Dialogue Evaluation." Findings of the Association for Computational Linguistics: EMNLP 2025, 2025.
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Crafting Customisable Characters with LLMs: A Persona-Driven Role-Playing Agent Framework
Findings of the Association for Computational Linguistics: EMNLP 2025
Recommended citation: Bohao Yang, Dong Liu, Chenghao Xiao, Kun Zhao, Chen Tang, Chao Li, Lin Yuan, Yang Guang, Chenghua Lin, "Crafting Customisable Characters with LLMs: A Persona-Driven Role-Playing Agent Framework." Findings of the Association for Computational Linguistics: EMNLP 2025.
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Pretraining a Generative AI Model on CBT Sessions to Emulate Human Therapist Strategies: A Study Using the APA PsycTherapy Database
SAIMBio Workshop at IEEE ICDM Workshops 2025, pp. 2011–2014
Publication details are indexed in Google Scholar.
Recommended citation: Fahad Islam, Kun Zhao, Bart P. Knijnenburg, Ming-Hui Chen, Alex Leow, Prasanna Muthukanagaraj, Liang Zhan, Chao Shi, "Pretraining a Generative AI Model on CBT Sessions to Emulate Human Therapist Strategies: A Study Using the APA PsycTherapy Database." IEEE ICDM Workshops, 2025, pp. 2011–2014.
Why Text Prevails: Vision May Undermine Multimodal Medical Decision Making
IEEE ICDM Workshops 2025, pp. 2020–2024
Recommended citation: Siyuan Dai, Lunxiao Li, Kun Zhao, Eardi Lila, Paul K. Crane, Heng Huang, Dongkuan Xu, Haoteng Tang, Liang Zhan, "Why Text Prevails: Vision May Undermine Multimodal Medical Decision Making." IEEE ICDM Workshops, 2025, pp. 2020–2024.
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Interpretable Multimodal Learning for Integrating Neuroimaging and Genetic Data in Alzheimer’s Disease
Frontiers in Radiology, 2026 (2025 JIF: 4.0)
R-GenIMA integrates ROI-wise 3D MRI representations with prompted SNP tokens for interpretable four-way NC/SMC/MCI/AD classification. Access the paper.
Recommended citation: Kun Zhao, Siyuan Dai, Yingying Zhang, Guodong Liu, Pengfei Gu, Chenghua Lin, Paul M. Thompson, Alex Leow, Heng Huang, Lifang He, Liang Zhan, Haoteng Tang, "Interpretable Multimodal Learning for Integrating Neuroimaging and Genetic Data in Alzheimer's Disease." Frontiers in Radiology, 2026.
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HERO: Hierarchical Evidential Reasoning Optimization for Radiology Report Generation via Reason-then-Summarize
Preprint · Under review at AAAI 2027
HERO develops factorized GRPO credit assignment for evidence-grounded radiology generation. Access the paper.
Recommended citation: Kun Zhao, Guodong Liu, Hui Ji, Siyuan Dai, Pan Wang, Jifeng Song, Chenghua Lin, Liang Zhan, Haoteng Tang, "HERO: Hierarchical Evidential Reasoning Optimization for Radiology Report Generation via Reason-then-Summarize." arXiv:2601.03321, 2026.
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FigEx2: Visual-Conditioned Panel Detection and Captioning for Scientific Compound Figures
Accepted · EMNLP 2026 Main Conference
FigEx2 localizes panels and generates panel-wise captions directly from compound scientific figures. Access the paper.
Recommended citation: Jifeng Song, Arun Das, Pan Wang, Hui Ji, Kun Zhao, Yufei Huang, "FigEx2: Visual-Conditioned Panel Detection and Captioning for Scientific Compound Figures." EMNLP 2026 Main Conference, accepted.
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Constrained Multiview Contrastive Learning for Jointly Supervised Representation Learning
Meta-Radiology, 4(3):100216, 2026
Recommended citation: Siyuan Dai, Kai Ye, Kun Zhao, Yang Du, Haoteng Tang, Liang Zhan, "Constrained Multiview Contrastive Learning for Jointly Supervised Representation Learning." Meta-Radiology, 4(3):100216, 2026.
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X-ray Made Simple: Lay Radiology Report Generation and Robust Evaluation
Findings of the Association for Computational Linguistics: ACL 2026
This work introduces refined lay radiology datasets, semantics-based evaluation, and lay-guided training. Access the paper.
Recommended citation: Kun Zhao, Chenghao Xiao, Sixing Yan, Haoteng Tang, William K. Cheung, Noura Al Moubayed, Liang Zhan, Chenghua Lin, "X-ray Made Simple: Lay Radiology Report Generation and Robust Evaluation." Findings of the Association for Computational Linguistics: ACL 2026, 2026.
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Artemis: Anatomy-Resolved inTervention for Eliminating Multimodal NeuroImage confounderS
Preprint
Recommended citation: Siyuan Dai, Yang Du, Kun Zhao, Zhusuyi Chen, Heng Huang, Paul Thompson, Chao Shi, Haoteng Tang, Liang Zhan, "Artemis: Anatomy-Resolved inTervention for Eliminating Multimodal NeuroImage confounderS." arXiv:2606.18287, 2026.
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Longitudinal Bayesian Learning of Continuous Disease Position across the Alzheimer’s Disease Continuum
Preprint
Recommended citation: Yingying Zhang, Kun Zhao, Guodong Liu, Qi Huang, Pengfei Gu, Dongchul Kim, Erik Enriquez, Alex D. Leow, Paul M. Thompson, Heng Huang, Hongchang Gao, Liang Zhan, Haoteng Tang, "Longitudinal Bayesian Learning of Continuous Disease Position across the Alzheimer's Disease Continuum." arXiv:2608.19436, 2026.
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DRE: An Effective Dual-Refined Method for Integrating Small and Large Language Models in Open-Domain Dialogue Evaluation
Neural Networks, 2026, 109574 (2025 JIF: 6.3)
DRE combines SLM-guided interior prompt refinement with exterior score refinement for open-domain dialogue evaluation. Access the paper.
Recommended citation: Kun Zhao, Bohao Yang, Chen Tang, Siyuan Dai, Haoteng Tang, Chenghua Lin, Liang Zhan, "DRE: An Effective Dual-Refined Method for Integrating Small and Large Language Models in Open-Domain Dialogue Evaluation." Neural Networks, 2026, 109574.
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talks
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Conference Proceeding talk 3 on Relevant Topic in Your Field
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teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
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Teaching experience 2
Workshop, University 1, Department, 2015
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